PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0071s0229.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 521aa    MW: 56926.4 Da    PI: 8.7819
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0071s0229.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000154464323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C++C+k F r  nL+ H r H
  Kaladp0071s0229.2.p 44 CEICNKGFQRDQNLQLHRRGH 64
                         *******************88 PP

2zf-C2H2110.0013119141123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  ks+ k H + +
  Kaladp0071s0229.2.p 119 WKCDKCPKKYAVKSDWKAHSKIC 141
                          58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.16E-74164No hitNo description
Gene3DG3DSA:3.30.160.602.4E-54164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8244264IPR007087Zinc finger, C2H2
SMARTSM003550.114264IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
SMARTSM0035511084114IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.6E-4107140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.16E-7114139No hitNo description
SMARTSM0035565119146IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MMSQATQPSA SSSALKRKRN LPDPDSEVVA LSPTSLMATN RFLCEICNKG FQRDQNLQLH  60
RRGHNLPWKL KQRSNKEVVK KKVYICPEKS CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK  120
CDKCPKKYAV KSDWKAHSKI CGTKEHKCDC GTLFSRKDSF ITHRAFCTAV VDQSGSRFAS  180
SVAAGTNNPL SLRNDFLSEN LGIPQGVDTN QFSGGGFYPE LSTSFHSYGH VSNSTDGSKS  240
VRHIIPQWLD QHPALNASAH LLMGNLAGNL SHELLLQNAG QVNLFGSSSS SQAPWLNKCT  300
DQSAFGGANM SSLDQILGNT SGGSSGMMQV KREDEILSNA DFVENMTTSL YNPNNLSHQQ  360
QQAITSNQSA ADQFLSSFYG RSNSNSLGLI SSGASNGQVS FAGNNNNGFV DNSSFCIISR  420
PPPPVIKDSD NTNASLNHHH QMLLHEAVAA GRAKPPETNP NAIKQQQAES SQTRDFLGVG  480
RNEIMREEQF QLAMVSDQQF GSAAAGAESD MSHYNQQWKH *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866596.11e-116PREDICTED: protein indeterminate-domain 9-like
TrEMBLB9T2Y01e-114B9T2Y0_RICCO; Nucleic acid binding protein, putative
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-93C2H2-like zinc finger protein